@WGierke, sure. Unfortunately I wasn't joking when I said I needed a new harddisk before I can start to run the models and I'm out of town for the next 2 weeks without my DL box. So feel free to merge into master now.
On a first glance I noticed you probably missed some dependencies, ```scikit-image``` and ```lxml```. Can you maybe take a look at my branch? I should have the complete list in the markdown file. Same location.
Also, I have seen that in order to get it running on Linux, you will have to remove and replace the dependency on ```ntpath``` with ```os.path``` in the step3 file. If I am not mistaken Python will handle this dependency automatically, so it should still work on Windows.
If I find anything else later I will create a new issue. Great writeups so far. Hope I can write one soon too.